A nested object such as {"server": {"port": 8080}} becomes a [server] table containing port = 8080. Arrays of objects use repeated [[name]] sections. Keys containing dots, spaces or punctuation are quoted so they stay single keys.
The converter changes the file format, not the configuration schema. A JSON package description still needs the fields expected by Cargo, Hugo or your application's TOML loader. An empty JSON object produces a blank TOML document, which is valid.